Just to clarify, you have presented 3 versions. I believe the consensus is the original version with the wood grain ( linen grain) cabinetry works the best and is most updated. The only thing that is out of place are the cabinets or "shelves" on both sides of the range hood. If this is what you need to find a solution too. I would suggest only experimenting with rendering options for these two cabinets( or shelves). This cabinet ties in all the other hard surfaces. The white is not working. It just adds another element. The black is a little dated.

I think a comfortable distance between the island and the counter is around 42". It seems that you have only 30" between your cook top and the counter. I might be a little too tight. The wall between the entrance and the kitchen could be 4' long instead of 6', you would then be able to move the island a foot which would give you more room between the cook top and the island. Could you switch the location of the toilet and vanity in your dad's bathroom so your enter facing a vanity instead of a toilet which is a lot nicer.

Unfortunately all your options require custom work: It looks like you need an 18" corner cabinet. You will have to modify the last wall cabinet on the left. As I am eyeballing it, you should be able to cut the last cabinet in the middle and then shorten the left section to fit the space of the wall next to the door trim. It's an option that makes the area looks symmetric. Or you can install shelves over the sink. I would not recommend it because it will take the looks away. And the last option will be to remove the last cabinet, shorten it so it fits over the sink and install a single cabinet where the double one was. This will leave a triangle space behind the corner where the two cabinets will meet. You can block the space under it. Hope this helps!

Option 4. I would not have more than 2 different cabinet finishes. Darker, grounded look for the base and island, with lighter, airier look for the uppers would balance the room.